PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03469.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 240aa    MW: 26689.9 Da    PI: 4.8423
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03469.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-1978128256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+G+r ++ +g+W++eIrdp++    +r++lg+f taeeAa a++ a+k+++g+
  Rsa1.0_03469.1_g00003.1  78 VYRGIRKRP-WGKWASEIRDPRK---GARVWLGTFNTAEEAAMAYDVAAKRIRGH 128
                              69*******.**********954...4**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-3278136IPR001471AP2/ERF domain
PfamPF008471.2E-1378128IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2378136IPR016177DNA-binding domain
PROSITE profilePS5103224.09278135IPR001471AP2/ERF domain
SMARTSM003808.2E-3878141IPR001471AP2/ERF domain
CDDcd000182.16E-3179134No hitNo description
PRINTSPR003671.2E-117990IPR001471AP2/ERF domain
PRINTSPR003671.2E-11101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MCGGAIISDF APNVTKAKGR KLTAEELWSE LDASAADDFW GFHPTFKTQS TNQQVTLKEE  60
ETAEKEPPTE KRRKRKNVYR GIRKRPWGKW ASEIRDPRKG ARVWLGTFNT AEEAAMAYDV  120
AAKRIRGHKA KLNFPDHPPP TPSPATPLAS SPVSEVQPPA KKVCVVSESE LTTQPSFPVE  180
CGGFGSGDEF QLDYDLKQQI SSLESFLELD GDTVEQPGQL DESVSEVDMW MIDDVIASYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2379135360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17185RRKRKNVYRGIRKRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526631e-118AK352663.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-O05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013604157.11e-153PREDICTED: ethylene-responsive transcription factor RAP2-3-like
SwissprotP427361e-126RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A0D3AD181e-153A0A0D3AD18_BRAOL; Uncharacterized protein
STRINGBra021200.1-P1e-151(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-108ethylene-responsive element binding protein